The Center cooperates with various clinics, centers and public organizations of near and far abroad:
- University Medical Complex "Charite" (Berlin, Germany)
- The Federal Scientific and Clinical Center for Pediatric Hematology, Oncology and Immunology of the Russian Ministry of Health. D.Rogacheva, Moscow
- Scientific and Practical Medical Center for Pediatric Cardiology and Cardiac Surgery of the Ministry of Health of Ukraine, Kiev
- Union of National Pediatric Societies of Turkic-speaking Countries of the World
- Scientific Research Institute of Cardiovascular Surgery after A. Bakulev Russian Academy of Medical Sciences (Moscow)
- National Children's Health Center, Moscow (Russia)
- Center for Neonatal Resuscitation and Surgery, City Children's Clinical Hospital No. 1, St. Petersburg
- Cardio-surgical center of Aji-Baden (Turkey)
- Novosibirsk Research Institute of Circulation Pathology named after Academician E. Meshalkin
- "Research Institute of Cardiology" of the Siberian Branch of the Russian Academy of Medical Sciences (Tomsk, Russia)
- The Scientific and Practical Center for Children's Oncology, Hematology and Immunology (Minsk, Republic of Belarus)
- Scientific and Practical Center for Organ and Tissue Transplantation (Minsk, Republic of Belarus)
- Haeudae Paek hospital, Pusan Paek Hospital (South Korea)
- Immunohistochemical laboratory of the city of Kil (Germany)
- Charitable organization "KER-Germany"
- University Hospital Motol Prague (Czech Republic)
- Institute of Pediatric Hematology and Transplantology named after R. M. Gorbacheva (St. Petersburg, Russia)